[llvm-commits] CVS: llvm-test/External/HMMER/Makefile README

[Evan Cheng]

Changes in directory llvm-test/External/HMMER:

Makefile added (r1.1)
README added (r1.1)
---
Log message:

Adding HMMER as an external test.

---
Diffs of the changes:  (+18 -0)

 Makefile |   16 ++++++++++++++++
 README   |    2 ++
 2 files changed, 18 insertions(+)


Index: llvm-test/External/HMMER/Makefile
diff -c /dev/null llvm-test/External/HMMER/Makefile:1.1
*** /dev/null	Wed Sep 20 18:43:44 2006
--- llvm-test/External/HMMER/Makefile	Wed Sep 20 18:43:34 2006
***************
*** 0 ****
--- 1,16 ----
+ LEVEL = ../..
+ 
+ include $(LEVEL)/Makefile.config
+ 
+ PROG = hmmcalibrate
+ SourceDir := $(HMMER_ROOT)
+ 
+ CPPFLAGS = -DSSE2
+ 
+ ifdef LARGE_PROBLEM_SIZE
+ RUN_OPTIONS = --fixed 400 --cpu 1 --num 200000 $(HMMER_ROOT)/globin.hmm
+ else
+ RUN_OPTIONS = --fixed 400 --cpu 1 --num 80000 $(HMMER_ROOT)/globin.hmm
+ endif
+ 
+ include $(LEVEL)/MultiSource/Makefile.multisrc


Index: llvm-test/External/HMMER/README
diff -c /dev/null llvm-test/External/HMMER/README:1.1
*** /dev/null	Wed Sep 20 18:43:50 2006
--- llvm-test/External/HMMER/README	Wed Sep 20 18:43:34 2006
***************
*** 0 ****
--- 1,2 ----
+ HMMER - profile hidden Markov models for biological sequence analysis
+ http://hmmer.wustl.edu/