[Openmp-dev] nvlink error : Undefined reference to '_ZNK14AggregateDatumIN4nest12ConnectionIDEXadL_ZNS0_10NestModule14ConnectionTypeEEEE5printERSo' in '/tmp/event_delivery_manager-656e32.cubin'

Itaru Kitayama via Openmp-dev openmp-dev at lists.llvm.org
Mon Feb 3 20:51:49 PST 2020 

Johannes,
Alexey's kept including the list all the time on this discussion.

Itaru.

On Tue, Feb 4, 2020 at 1:47 PM Johannes Doerfert <jdoerfert at anl.gov> wrote:

>
> @Alexey
>
> Could you please reply to the list as well. It is way more difficult to
> follow the conversation this way.
>
>
> On 01/21, Itaru Kitayama via Openmp-dev wrote:
> > int main() {
> > #pragma omp target parallel for
> > for (int i=0;i<10;i++) {
> > int *a = new int[100];
> > }
> > }
> >
> > Is the above supported?
> >
> > Currently, I get:
> > nvlink error   : Undefined reference to '_Znam' in
> '/tmp/new-c045d3.cubin'
> > clang-11: error: nvlink command failed with exit code 255 (use -v to see
> > invocation)
> >
> >
> > On Tue, Jan 21, 2020 at 8:21 AM Itaru Kitayama <itaru.kitayama at gmail.com
> >
> > wrote:
> >
> > > This reproducer attached, while it may have irrelevant code, shows the
> > > issue.
> > >
> > > clang++ -g -fopenmp -fopenmp-targets=nvptx64 my1.cpp
> > >
> > >
> > > On Fri, Jan 17, 2020 at 3:16 PM Alexey Bataev <a.bataev at outlook.com>
> > > wrote:
> > >
> > >> No idea what does it mean. What  object? Where locally? Provide code
> and
> > >> steps to reproduce.
> > >>
> > >> -------------
> > >> Best regards,
> > >> Alexey Bataev
> > >>
> > >> 16.01.2020 6:50 PM, Itaru Kitayama via Openmp-dev пишет:
> > >>
> > >> Hi,
> > >>
> > >> Locally creating an object under the target region causes nvlink
> > >> errors (same code builds fine without offloading support flags):
> > >>
> > >>  nvlink error   : Undefined reference to
> > >>
> '_ZNK14AggregateDatumIN4nest12ConnectionIDEXadL_ZNS0_10NestModule14ConnectionTypeEEEE5printERSo'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >>
> '_ZNK14AggregateDatumIN4nest12ConnectionIDEXadL_ZNS0_10NestModule14ConnectionTypeEEEE6pprintERSo'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZNK5Datum4infoERSo' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '__assert_fail' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> '_ZN4nest12ConnectionIDC2ERKS0_'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_Znam' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEaSEOS4_' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEED1Ev' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >>
> '_ZStlsIcSt11char_traitsIcESaIcEERSt13basic_ostreamIT_T0_ES7_RKNSt7__cxx1112basic_stringIS4_S5_T1_EE'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest19WeightRecorderEventclEv' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN3sli4pool4growEm' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> '_ZSt20__throw_length_errorPKc'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZSt17__throw_bad_allocv' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_Znwm' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to 'strlen' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN5TokenC1El' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZdlPv' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to 'rand' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN5TokenC1Ed' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest19WeightRecorderEventC2Ev' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZSt29_Rb_tree_insert_and_rebalancebPSt18_Rb_tree_node_baseS0_RS_' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_Z8getValueIdET_RK5Token' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> '_ZN4nest12ConnectionIDC1Elllll'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_Z8ld_roundd' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNK4nest11SourceTable7get_gidEijm' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '__dynamic_cast' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> '_ZNK4nest12ConnectionIDeqERKS0_'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest17ConnectionManager17get_delay_checkerEv' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest12DelayChecker21assert_valid_delay_msEd' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1Ev' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE7reserveEm' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE4sizeEv' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE6appendEPKcm' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE6appendERKS4_'
> in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >>
> '_ZN4Name6insertERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZSt18_Rb_tree_incrementPSt18_Rb_tree_node_base' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest4Time5Range12STEPS_PER_MSE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN4nest5names6targetE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN4nest5names6weightE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN4nest5names7size_ofE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN4nest5names5delayE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest4Time5Range11MS_PER_STEPE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN4nest5names5rportE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZStL19piecewise_construct'
> in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest13KernelManager24kernel_manager_instance_E' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZN10Dictionary9VoidTokenE'
> in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >> '_ZN4nest10NestModule14ConnectionTypeE' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZTV5Datum' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to
> > >>
> '_ZN14AggregateDatumIN4nest12ConnectionIDEXadL_ZNS0_10NestModule14ConnectionTypeEEEE6memoryE'
> > >> in '/tmp/event_delivery_manager-656e32.cubin'
> > >> nvlink error   : Undefined reference to '_ZL14max_block_size' in
> > >> '/tmp/event_delivery_manager-656e32.cubin'
> > >> clang-11: error: nvlink command failed with exit code 255 (use -v to
> see
> > >> invocation)
> > >> make[2]: *** [nestkernel/libnestkernel.so] Error 255
> > >> make[1]: *** [nestkernel/CMakeFiles/nestkernel.dir/all] Error 2
> > >> make: *** [all] Error 2
> > >>
> > >> What should I do?
> > >>
> > >> _______________________________________________
> > >> Openmp-dev mailing listOpenmp-dev at lists.llvm.orghttps://
> lists.llvm.org/cgi-bin/mailman/listinfo/openmp-dev
> > >>
> > >>
>
> > _______________________________________________
> > Openmp-dev mailing list
> > Openmp-dev at lists.llvm.org
> > https://lists.llvm.org/cgi-bin/mailman/listinfo/openmp-dev
>
>
> --
>
> Johannes Doerfert
> Researcher
>
> Argonne National Laboratory
> Lemont, IL 60439, USA
>
> jdoerfert at anl.gov
>
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